Developed for bench biologists and bioinformaticians, The Department of Energy Systems Biology Knowledgebase (KBase) is a software and data science platform designed to meet the grand …

KBase integrates a variety of data and analysis tools, from DOE and other public resources, into an easy-to-use platform that leverages scalable computing infrastructure to perform sophisticated …

Developed for bench biologists and bioinformaticians, The Department of Energy Systems Biology Knowledgebase (KBase) is a software and data science platform designed to meet the grand …

Nov 5, 2025 · KBase offers a powerful suite of expression analysis Apps. Starting with short reads, you can use the tool suite to assemble and quantify long transcripts, identify differentially expressed …

KBase allows users to run sophisticated systems biology workflows, perform large-scale analyses, and combine multiple lines of evidence to investigate genes, organisms, and their communities.

Here you will find guidance for getting started with KBase, full documentation for users and App developers, and help with troubleshooting.

Getting Started An introduction to KBase and guide on how to get started. What you can find in this section:

Developed for bench biologists and bioinformaticians, The Department of Energy Systems Biology Knowledgebase (KBase) is a software and data science platform designed to meet the grand …

Annotate your assemblies, isolate genomes, or MAGs with DRAM and distill resulting annotations to create an interactive functional summary per genome or assembly. Use for KBase assembly objects.

Let us help with your DMPs and ways to engage with KBase! Find resources and information to help with developing DOE-required Data Management Plans and Funding Opportunities.