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  1. 9 Figures, Tables, Captions. | RMarkdown for Scientists

    But say that we want more control over the output, like we want to center the image, and we want to make it smaller? Then you can use knitr::include_graphics(), and control the figure size …

  2. RMarkdown for Scientists

    Sep 9, 2020 · About this This is a book on rmarkdown, aimed for scientists. It was initially developed as a 3 hour workshop, but is now developed into a resource that will grow and …

  3. 6 Using Rmarkdown | RMarkdown for Scientists

    The benefit of this is that all your functions are in one spot, and you might be able to identify ways to make them work better together, or improve them separately. You might even want to move …

  4. 14 Captioning and referencing equations | RMarkdown for ...

    A book created for a 3 hour workshop on rmarkdown14 Captioning and referencing equations This section introduces how to add captions to equations, and reference them in text. Note …

  5. 2 Why RMarkdown | RMarkdown for Scientists

    Imagine your paper - the introduction, methods, results, discussion, and conclusion, and all the bits of code that make each section. With rmarkdown, you can see all the pieces of your data …

  6. 12 Citing Figures, Tables & Sections | RMarkdown for Scientists

    Make the output the HTML/PDF/Word document from the bookdown package. That is, the special :: after bookdown, bookdown::html_document2 read as “The html_document2 function from …

  7. 7 HTML, PDF, and Word (and more!) | RMarkdown for Scientists

    7 HTML, PDF, and Word (and more!) One of the really great, powerful things about rmarkdown is that we can convert it to many different output types. The top three that you might be most …

  8. 10 Customising your figures | RMarkdown for Scientists

    10 Customising your figures When you produce figures, you usually want to tweak them a little bit. A bit wider, perhaps a bit taller. Perhaps a different image type other than “png”, because the …

  9. 15 Common Problems with rmarkdown (and some solutions ...

    You need to make sure that you actually print the table or plot. If you create the plot and save it, but do not print it in the document, then you will not be able to reference the plot or table.

  10. 4 RStudio, What and Why | RMarkdown for Scientists

    But in order to make things properly functional, you need to have a steering wheel, comfy seats, a radio, rear and side view mirrors, storage, and seatbelts. The RStudio layout has the following …